PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0380s00130.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 200aa MW: 22514.1 Da PI: 4.6365

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0380s00130.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.7	5e-32	5	121	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf F+Ptdeel+ ++L +k++ ++ +i+++d+ ++Pw+L+ k+ ++ +e yfFs+++ +nr+t++gyWk+ g ++++ Vradi0380s00130.1 5 LPPGFCFSPTDEELLLHFLYPKTSLPCHPN--IIPDLDLSLHDPWHLNGKALSSGNEQYFFSRAK--------ENRSTENGYWKEIGLTEAI 86 79******************98776555..8**********977778899*9974........5899*********** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +e+vglkk Lvf g+ap+g++t+W+m+ey++ Vradi0380s00130.1 87 VS-ASEKVGLKKYLVFNLGEAPQGTETSWFMQEYHI 121 .9999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-40	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	38.285	5	155	IPR003441	NAC domain
Pfam	PF02365	1.1E-19	6	121	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MSVNLPPGFC FSPTDEELLL HFLYPKTSLP CHPNIIPDLD LSLHDPWHLN GKALSSGNEQ 60 YFFSRAKENR STENGYWKEI GLTEAIVSAS EKVGLKKYLV FNLGEAPQGT ETSWFMQEYH 120 ICSSSFSTAS SGSTRGRRKS DQCRSKWVLC KAYEKKSCEG QQGVNCEKDE NDSGTELSWL 180 DEFYMSLDDD IEEVMSLPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	3	157	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	3	157	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	3	157	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	3	157	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	3	157	18	170	NAC domain-containing protein 19
3swm_B	2e-31	3	157	18	170	NAC domain-containing protein 19
3swm_C	2e-31	3	157	18	170	NAC domain-containing protein 19
3swm_D	2e-31	3	157	18	170	NAC domain-containing protein 19
3swp_A	2e-31	3	157	18	170	NAC domain-containing protein 19
3swp_B	2e-31	3	157	18	170	NAC domain-containing protein 19
3swp_C	2e-31	3	157	18	170	NAC domain-containing protein 19
3swp_D	2e-31	3	157	18	170	NAC domain-containing protein 19
4dul_A	2e-31	3	157	15	167	NAC domain-containing protein 19
4dul_B	2e-31	3	157	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0380s00130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-131	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014523778.2	1e-148	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-53	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1S3VZG8	1e-147	A0A1S3VZG8_VIGRR; NAC domain-containing protein 104
STRING	XP_007159851.1	1e-129	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-54	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]