PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0381s00020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 393aa    MW: 43654.7 Da    PI: 6.6239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0381s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17350148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed  l+d+v+++G g+W+++ r  g++R++k+c++rw ++l
  Vradi0381s00020.1  3 KGPWTAAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHL 50
                       79******************************************9986 PP
2Myb_DNA-binding38.72.3e-1256112146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqk 46 
                        +g++++eE++l+++++ q+G++ W++ a+ +              gRt++++k++w++
  Vradi0381s00020.1  56 KGAFSPEEEKLIIELHSQFGNK-WARMAALILnsvslvaaatqlPGRTDNEIKNYWNT 112
                        799*******************.8888888888888888888899***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.735154IPR017930Myb domain
SMARTSM007174.4E-14252IPR001005SANT/Myb domain
SuperFamilySSF466897.42E-272110IPR009057Homeodomain-like
PfamPF002499.7E-15350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-23457IPR009057Homeodomain-like
CDDcd001676.97E-11550No hitNo description
SMARTSM007173.8E-1255116IPR001005SANT/Myb domain
PROSITE profilePS5129413.87455118IPR017930Myb domain
PfamPF002491.8E-1156112IPR001005SANT/Myb domain
CDDcd001671.10E-858112No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2358117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
LKKGPWTAAE DAVLIDYVTK HGEGNWNAVQ RNTGLNRCGK SCRLRWANHL RPNLKKGAFS  60
PEEEKLIIEL HSQFGNKWAR MAALILNSVS LVAAATQLPG RTDNEIKNYW NTRIKRRQRQ  120
DQSPLPLSSS SPSSLSFTFQ RPEPLLCTPL RFKRYRASSS YNPLPDLPLT TQFPHLDAFR  180
FPVSSGFSPF FQPSFVESDR GISSSSSFQP KLDLPSSQFY KPPQEQDIKL DIDFNDPSFQ  240
TRSGLLGGLL LEAQALASGQ NSKKRPHLSL NEGNDFFDAC QSFEDFPSSS LYWPSSASAA  300
KAKEEAPDLS KFTNEELSSL LTVFPSSNTE GHDWLNNGDQ EGLNVQPCGS GMTDDNFGVD  360
IKPVASLFPL TNTTNHNENQ GCYPWDNLPG LC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2811175107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0381s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022632584.11e-163transcription factor MYB97
TrEMBLA0A0R0J5L01e-165A0A0R0J5L0_SOYBN; Uncharacterized protein
STRINGGLYMA08G42955.11e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-58myb domain protein 33