PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0389s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 710aa    MW: 79119.2 Da    PI: 5.2892
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0389s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.7e-06122143527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C ff++ G C  GdrC F+Hgp
  Vradi0389s00010.1 122 PCFFFQK-GLCLKGDRCAFMHGP 143
                        6777777.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6062453IPR000571Zinc finger, CCCH-type
PfamPF156633.5E-122579No hitNo description
SMARTSM003560.0022552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.7795581IPR000571Zinc finger, CCCH-type
SMARTSM003560.00595780IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009117144IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6117143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6118142IPR000571Zinc finger, CCCH-type
PfamPF146081.2122142No hitNo description
Gene3DG3DSA:4.10.1000.104.7E-4122143IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MVTPQPQLQV QPQQPAPSSQ DEALKRNTDC VYFLASPLTC KKGNECEYRH SEYARVNPRD  60
CRYWLSGNCL NPKCSFRHPP LDGLLGTQAA TAGGPSVSAP PSQIPTASAI HASYNSTKQA  120
VPCFFFQKGL CLKGDRCAFM HGPPAPSTGN KVAAQVPVTS QGVENPGFKK PFGTNEKYTQ  180
ERKTSQGNVA KSGGDPEPKP APKIDSAPKR NMFELEKEMP PPSGGFDNEA SRFKTSSPPV  240
TNGPTVVRSS RLHQARVPDD HNFHSGKDND EFLRESSPGF DVLVADELRN SDYYHGEDEF  300
GKARGPDERN LDSLNEYDLG HSGEYGLAAD IDRERFRVPQ GYESYDHTQE PYLWEQHRKA  360
SAHLDRRTRR RSGSPENAEI SDLRHHLSKR RKVNGLKSVV SHDHALEGHG EEQSHRSFSR  420
KDSLQLPLNE SSLGNRFRGR IKLPANGDTD QLERDDRGRI RGRLLSGRLQ ATQQGRIHDR  480
MRGRLQDDER RNSKDRLMGR ELIGGDRSDF AGPKSLAELK NGRNPENREP QPLGKRGTLR  540
DDHPQSEDDL QFDGPKPLSE ILKEKKRGGP GGRADGDSGN GKSSNIKNEE VTNGLDPTQV  600
TNTQNGVLSE IKEFVNNQNN EESKVEVTEV VGGETGATDG QYEEGMYDEA GEDQYYEGDD  660
QREGDYEYEQ GDEGYYEYDQ GEEGENQEEE YMDEEDGDDF AKKIGVIHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0389s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523737.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A1S3VZT50.0A0A1S3VZT5_VIGRR; zinc finger CCCH domain-containing protein 17
STRINGXP_007158839.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137