PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g00140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 289aa    MW: 32032.2 Da    PI: 6.3902
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.23.1e-22213263151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      k r++Wt +LHe F+  v++LGG+ekA Pk+il++mk + L+++hvkSHLQ
  Vradi03g00140.1 213 KRRIKWTDDLHEPFMMIVNSLGGPEKAKPKAILDMMKSDLLSISHVKSHLQ 263
                      689***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-18211263IPR009057Homeodomain-like
SuperFamilySSF466891.67E-9212263IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-17213263IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MYQCSSQMYG TDWESYMGIS NLAKVVGSEQ MSVLEPKNSP FNIVTAPQGF CATATKGLVS  60
FQAQQHAHQI EVPAWCFDSN MLNIRQASGD NFTTKQDPPS SQFTSSLCPV AESFLSSSTG  120
ADCPSSSEKY CKITSYSEKH SSMQPDGMPY YDRFSQEEDK LLRDDAATDE RPLEISFQRN  180
QLESCTKPQK QAPHRLCGVA CVTSSNSASR RGKRRIKWTD DLHEPFMMIV NSLGGPEKAK  240
PKAILDMMKS DLLSISHVKS HLQLPLCLSE KSEEGQRMDG VAELQVKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-15212263152Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634664.10.0protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A3Q0EW580.0A0A3Q0EW58_VIGRR; protein PHOSPHATE STARVATION RESPONSE 1-like
STRINGXP_007162314.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144901016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-17phosphate starvation response 1