PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 399aa    MW: 44303.3 Da    PI: 9.9485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13326371655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  s ae+L +Av+YIk+Lq
  Vradi03g01980.1 326 SIAERVRRTRISERIRKLQELVPNM----EKQTSTAEMLDLAVDYIKNLQ 371
                      689*********************7....477*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16323387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-12324373No hitNo description
Gene3DG3DSA:4.10.280.105.8E-14325384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDSNSRYQLQ QQHQPNSGLL RFRSAPTQVL ANFKQPEASS VNANPWEGSE PLLRFFNSGD  60
TLDTTSPTLR EFVDNKVSNE NKQPKESTIS SSSSSLSPLT RMNSQQGYST SVLPSRYPRH  120
DSTVTVSSSM MVGSVGMDQG GKIFNPNLLR QSSFPSGNFS NSISFHNGYD GMKGVENFGG  180
VNGIDGEHRI SMNRMKNHIS FSPRSPSSLG ILSPTSKMGT EGLRVTSPED GRHGGSNGDA  240
RYYGPGFPYA SWNETSNAKR QRNSNDELLS EAQNGELGNQ VHSLSYHLSL PRTSSEMFAM  300
DNLLQFNDSV PCKIRAKRGF ATHPRSIAER VRRTRISERI RKLQELVPNM EKQTSTAEML  360
DLAVDYIKNL QNQFKNLSER RAKCKCTNMQ KPETDKIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495363.10.0transcription factor bHLH130
TrEMBLA0A1S3TNK90.0A0A1S3TNK9_VIGRR; transcription factor bHLH130
STRINGXP_007162279.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-60bHLH family protein