PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g04100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 226aa    MW: 25540 Da    PI: 9.2277
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g04100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.61.9e-24104202186
         trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                      +Wt+ +v++Li a+ +++++ +++             +kk++W++vs+ m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ +++++++  +
  Vradi03g04100.1 104 KWTDTMVRLLIMAVYYIGDEAGSEGadptkkkatgllQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQTL 197
                      7**************9999888643366777899999**********************************************5599****999 PP

         trihelix  82 fdqle 86 
                      +d ++
  Vradi03g04100.1 198 LDTMD 202
                      99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.8E-22102193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEPNALGGGI FPNISSGLIG VENLQNQQNP PHPLHHPQMV SYASHHDTDT HQQHPPQSIK  60
HGYNYSAGKT NKLQITLSDE DEPGFTAEDS GDPKRKMSPW HRMKWTDTMV RLLIMAVYYI  120
GDEAGSEGAD PTKKKATGLL QKKGKWKSVS RGMMEKGYYV SPQQCEDKFN DLNKRYKRVN  180
DILGKGTACR VVENQTLLDT MDLSPKMKEE VRKLLNSKHL FFREM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g04100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495639.11e-170uncharacterized protein LOC106757480
TrEMBLA0A1S3TPF91e-169A0A1S3TPF9_VIGRR; uncharacterized protein LOC106757480
STRINGXP_007162836.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-64sequence-specific DNA binding transcription factors