PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi03g04130.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 27134.8 Da PI: 8.7155

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi03g04130.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3.1e-19	71	125	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle+Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k Vradi03g04130.1 71 EKKKRLTSNQLEILERSFQEEIKLDPEKKMKLSRELGLQPRQIAVWFQNRRTRWK 125 57788*************************************************9 PP
2	HD-ZIP_I/II	117.4	8.3e-38	71	162	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+++LE+sF+ee kL+pe+K++l+reLglqprq+avWFqnrR R+ktkqlE+ y+aLk++yd +++e+++L++ev +L++ l+ Vradi03g04130.1 71 EKKKRLTSNQLEILERSFQEEIKLDPEKKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDALKHQYDVISNEKQKLQEEVVKLKAMLS 162 69**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.46E-19	61	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.896	67	127	IPR001356	Homeobox domain
SMART	SM00389	7.6E-18	69	131	IPR001356	Homeobox domain
CDD	cd00086	1.85E-16	70	128	No hit	No description
Pfam	PF00046	1.1E-16	71	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-20	73	134	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.4E-9	127	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEFNGKRDLA LKLYKDMDWH YTTKPFLPHP DTLSFFYNYN NNPCPGVEVK QATLLERGEG 60 SIPAMYNGSK EKKKRLTSNQ LEILERSFQE EIKLDPEKKM KLSRELGLQP RQIAVWFQNR 120 RTRWKTKQLE HLYDALKHQY DVISNEKQKL QEEVVKLKAM LSKEQGFGKQ RLGGYPEISG 180 VETVESTSEG LRGSNKAQGK SNIEQVADEG FCSFSVEDYN TVSVPFCQWP VVPY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRTRWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi03g04130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-167	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014495698.2	1e-176	homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q9LZR0	2e-43	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1S3TPH5	1e-174	A0A1S3TPH5_VIGRR; homeobox-leucine zipper protein ATHB-22-like
STRING	XP_007162834.1	1e-138	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-45	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]