PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g04230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 258aa    MW: 28639.1 Da    PI: 9.0132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g04230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-05231254123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ C++sF++ + L++H r  H
  Vradi03g04230.1 231 YSCKPCSRSFKTEDALNSHNRAkH 254
                      89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.6E-6231255IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4231255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.175231257IPR007087Zinc finger, C2H2
PROSITE patternPS000280233254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYSHHILETV RLFLETFFLP WTVSATMEFW GVEVKSGESL KVDPGDDKII HLSNACLGDV  60
TKAKGESVAL YVKFGNQKLV LGTLSSDKFP QVSYDLIFEK EFELSHSWKN GRKPEFEVKH  120
GVKPDEAKQK KTADPKKNEK AKEKDANGED EDSSESDSDD DSSEDKIEAG KKRNIDSAKK  180
TTVPVKKTKF VTPQKTDSKN VVHVATPYPS KQAGKAIADN KRQTPKSGGD YSCKPCSRSF  240
KTEDALNSHN RAKHSAK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g04230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-88AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
GenBankBT0951671e-88BT095167.1 Soybean clone JCVI-FLGm-6J20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496388.21e-157histone deacetylase HDT3 isoform X1
SwissprotQ8LJS22e-49HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A1S3TRJ01e-156A0A1S3TRJ0_VIGRR; histone deacetylase HDT3 isoform X1
STRINGGLYMA03G34850.31e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-30histone deacetylase 3