PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g04880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 149aa    MW: 16794.8 Da    PI: 10.1306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g04880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.82.9e-301101595
                      -..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   5 ltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      ltpsdv+k++rlv+pk++ae+h           g++++++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v F++++++
  Vradi03g04880.1   1 LTPSDVGKLNRLVIPKQHAEKHfplessssssCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTH 94 
                      68***********************99999994456799**************************************************87766 PP

                      EE..EEE CS
               B3  89 efelvvk 95 
                       +++++ 
  Vradi03g04880.1  95 PQRFFIN 101
                      6656655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-291101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.4511106IPR003340B3 DNA binding domain
CDDcd100171.18E-27193No hitNo description
Gene3DG3DSA:2.40.330.104.2E-361108IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.7E-171104IPR003340B3 DNA binding domain
PfamPF023624.4E-271100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
LTPSDVGKLN RLVIPKQHAE KHFPLESSSS SSCGDSAKGV LLSFEDESGK CWRFRYSYWN  60
SSQSYVLTKG WSRYVKDKRL HAGDVVFFHR HRTHPQRFFI NSSRRQANPP ANVTTTATPS  120
SYSAHPYPAH QLPFPYQPHS LHAAPGIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-44110718119DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g04880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495594.11e-105B3 domain-containing protein At2g36080-like
SwissprotQ8RYD38e-50Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A1S3TPB71e-104A0A1S3TPB7_VIGRR; B3 domain-containing protein At2g36080-like
STRINGXP_007162942.14e-89(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.22e-50B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]