PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g05610.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 738aa    MW: 82192.9 Da    PI: 7.7335
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g05610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.2e-24145232183
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f kvltpsd++++g +++pk++a+e+       ++++  ++++ +d++g +W +++iyr++++r++lt+GW+ Fv+a++L +gD+++F 
  Vradi03g05610.1 145 FGKVLTPSDTSTHGGFSIPKRHADECfrpldmTLQTPA-QEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFV 232
                      679***************************98555444.59***********************************************6 PP
2Auxin_resp83.74e-28297378183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+s+F+v+Y+P++ + eF++++++++k++   +s+G+R++m+ + e+s + r++Gt++g + +d++rWp+S+Wr+Lk
  Vradi03g05610.1 297 ASHAVATGSMFTVYYHPWTNPFEFIIPLQNYLKSTVPDYSIGTRVQMQCDVEESLR-RYAGTIIGNEVIDSIRWPGSEWRCLK 378
                      789*************************************************9865.67**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-33137243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-35138279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-21144231No hitNo description
SMARTSM010195.2E-18145247IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773145247IPR003340B3 DNA binding domain
PfamPF023625.8E-22145232IPR003340B3 DNA binding domain
PfamPF065072.1E-27297378IPR010525Auxin response factor
SuperFamilySSF542777.06E-5611678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MLAVRSTVVG VMIERREMPR KRKQTMLLCC TCAYWNTHCE GGMAMEKGGT DDLYTELWRA  60
CAGSSVYVPR VAAFTQHQQD GHMEIPVYDL PPKILCRVVC VLLKAETYTD EVFAQVTLVP  120
EPRQNHFGLE NEDNNVPSRT TTYSFGKVLT PSDTSTHGGF SIPKRHADEC FRPLDMTLQT  180
PAQEIVAKDL HGFEWHFRHI YRGQPKRHLL TSGWSTFVNA KKLVAGDSCI FVRYFLSPCL  240
LSLLPMDYVC AVPEELCGED GQVRVGIRRA IRHHGNASPS SSLISGHSMQ LGILASASHA  300
VATGSMFTVY YHPWTNPFEF IIPLQNYLKS TVPDYSIGTR VQMQCDVEES LRRYAGTIIG  360
NEVIDSIRWP GSEWRCLKVQ WDAIVDAFMH PERVCPWWIE PLESGMEKHI PVLPNPKKAH  420
VLHQRPLPGL NVFAMDDAAA QSSARRVADR GLQGQDYSGL STSRALQRPP STDVIHPSKF  480
SIGGSQFGKE NLNQLPFLMQ DILHKSLGRS RSLPHEDLSI SSSNLSSICS ESLGWPPSES  540
RNENDAPLGH LGSCSKYKLF GVNLIDRQPE LPSPQFAGFS KTSSLLSSPP MCVTSGKTCK  600
KCRSVNNRSC TKVLKLGTAL GRAVDLTRFR GYDELIAELD SMFDFGGSLV NGSSGWHVTC  660
IDDDGDMMFL RDYPWQGFPV YGAKDDHMSE GWYQQSQSKL FNRSSKPLVI RLASLSPQLA  720
GLVHLSKSVL SMQPIPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1045040416357Auxin response factor 1
4ldw_A1e-1045040416357Auxin response factor 1
4ldw_B1e-1045040416357Auxin response factor 1
4ldx_A1e-1045040416357Auxin response factor 1
4ldx_B1e-1045040416357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g05610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635038.10.0auxin response factor 2A
RefseqXP_022635039.10.0auxin response factor 2A
TrEMBLA0A3Q0EX700.0A0A3Q0EX70_VIGRR; Auxin response factor
STRINGXP_007163052.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-115auxin response factor 2