PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g05670.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 345aa    MW: 38345.1 Da    PI: 6.9128
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g05670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-07952340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Vradi03g05670.1  9 ARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTnqlfskHTRT 52
                     678******99*********************668888888876 PP
2zf-B_box279.1e-095497542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                      C+ +++ ++++ C ++ + lC++C  e+H +       H+++pl
  Vradi03g05670.1 54 LCDACDHSPATILCSTDTSVLCQNCDWEKH-NpslsdslHQRRPL 97
                     7*****************************.54899999988775 PP
3CCT60.36.3e-21298340143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      R+ allRYk+K+ktR+++K+irYesRK++AesR RvKGrF+k 
  Vradi03g05670.1 298 RDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKM 340
                      899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-14754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.594754IPR000315B-box-type zinc finger
PfamPF006432.5E-6852IPR000315B-box-type zinc finger
CDDcd000216.03E-71054No hitNo description
PROSITE profilePS5011910.0965097IPR000315B-box-type zinc finger
PfamPF006433.1E-65496IPR000315B-box-type zinc finger
CDDcd000212.45E-55497No hitNo description
SMARTSM003360.135597IPR000315B-box-type zinc finger
PROSITE profilePS5101714.485298340IPR010402CCT domain
PfamPF062038.3E-16298340IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTAEAPKPAR PCDYCGHSMA VLYCRADSAK LCFSCDREVH STNQLFSKHT RTLLCDACDH  60
SPATILCSTD TSVLCQNCDW EKHNPSLSDS LHQRRPLEGF TGCPSVSELL SVVGFGDLSK  120
KSLLSSPQGS VADGFLGCEI EGFSDLFVWD APSVVTLDDL ICSSASSHSF QAMEVPPLPK  180
NRKAACGRHR EEILSQLREL AKSEPLDLEQ YVQPGNLSSA FESDVEWHRE RSEPMYQVVP  240
PDPSLRTYTE EVPVKQSTSV GETHTFGDKG GNPSISLNSE TLPTTPKAGA CELTSQERDS  300
ALLRYKQKKK TRRYDKHIRY ESRKVRAESR VRVKGRFAKM EREH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312QKKKTRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g05670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496130.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_014496131.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_014496132.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_014496133.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_014496134.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_014496135.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A1S3TQR30.0A0A1S3TQR3_VIGRR; zinc finger protein CONSTANS-LIKE 13
STRINGXP_007163062.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-93B-box type zinc finger protein with CCT domain