PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g06560.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 259aa    MW: 29537.6 Da    PI: 4.6805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g06560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-3056114259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+
  Vradi03g06560.1  56 SDFWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCRTDASMLIITYTSTHNHP 114
                      699***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3148116IPR003657WRKY domain
PROSITE profilePS5081131.86950116IPR003657WRKY domain
SuperFamilySSF1182906.41E-2653116IPR003657WRKY domain
SMARTSM007743.2E-3555115IPR003657WRKY domain
PfamPF031063.7E-2557114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDTDANASSQ PDSEPFSELK SSETQTSKKR KLVEKTVVAV RIGENVGKLK NEGLPSDFWS  60
WRKYGQKPIK GSPYPRGYYK CSTSKGCSAK KQVERCRTDA SMLIITYTST HNHPCPTTTN  120
SPQQPKEYES ETTQDLSATS KEENQEHTEE EQRDDKPSDE GRNEEKFLYL QSPIRCSQDI  180
IIEQEDPFKL NTEKNHERID LLLEEEEPLC YGQVKNMSGS KSEELDFFDE LEELPMSSSF  240
LHFTRSIFSD ERIPVAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-21561171780Disease resistance protein RRS1
5w3x_D1e-21561171780Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g06560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195560.0EU019556.1 Glycine max WRKY8 (WRKY8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495207.10.0probable WRKY transcription factor 69
TrEMBLA0A1S3TNA00.0A0A1S3TNA0_VIGRR; probable WRKY transcription factor 69
STRINGGLYMA19G40470.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-36WRKY DNA-binding protein 35