PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g07220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 603aa    MW: 64923.2 Da    PI: 6.4171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g07220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.8e-16394440455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Vradi03g07220.1 394 VHNLSERRRRDRINEKMRALQELVPNC-----NKADKASMLDEAIEYLKTLQ 440
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.7E-21387448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-20388451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.266390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-17393444No hitNo description
PfamPF000101.9E-13394440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MNNNTCAADQ SYASKNDLFE LVWEKGQISM QGQSFRARKS PNCKTLPSHC LPSHTPLGGY  60
AKDNNTTITR MGKCGSLGAE LNEITRVVPS GEVYFSEEEE AEDMVMPWLN YGMDDSLQHG  120
YSSDFFNELS GVTMNEPSAS NGFSLLDRRN SCSKVFRDTH KNTPFASVRS KIVDIAENNT  180
NNVPSPSSGF SGLKMEKQGS VACGNSSTMM NFSHFAKPVA IVKANLENIG LASRSASVGI  240
KIKGAAATVA TNPAESSKVE LFGECPKKAV TQSHQVTEPK PLEQDGAVST KCDPSCKDVC  300
RIDDTSNLVV GESVNKGKEA VEKNEQPAVV SSSVCSGNGA ERCSKDPNQN LKRKSVDTDD  360
FESQSEDVEE ESVGVEKEVP APQIGAKRHR SAEVHNLSER RRRDRINEKM RALQELVPNC  420
NKADKASMLD EAIEYLKTLQ LQLQVMSMGT GLYMPAMMLP PGIQHMHARH MGPFPPIGVG  480
MQMRLRVGCG MGMIDGNDET SGFPMAHVPQ MQGAKLPIAH ASGSTALHGM PNGQVFGVLG  540
QGHPMPMPHA PIFSFPGESF MEPSTLGLNA CGTALTENVG SVSACNLKDP VPHVNSQDAT  600
KH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398403ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g07220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494888.10.0transcription factor PIF3
TrEMBLA0A1S3TMA40.0A0A1S3TMA4_VIGRR; transcription factor PIF3
STRINGGLYMA19G41261.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-51phytochrome interacting factor 3