PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g07600.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 81aa    MW: 9053.71 Da    PI: 9.1867
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g07600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA245.6e-083172135
             GATA 21 tLCnaCGlyyrkkgl 35
                     tLCnaCG++yrk+g+
  Vradi03g07600.1  3 TLCNACGIRYRKRGS 17
                     5***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.1E-4216IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MQTLCNACGI RYRKRGSCSR KREEVVVLHR TSSVVKKQRW KMLGEEEQAA VCLMALSCGF  60
FTIPSLTAFQ VLCIVDDVRA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g07600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-107AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495606.15e-44GATA transcription factor 16
RefseqXP_017417966.13e-44PREDICTED: GATA transcription factor 16-like
TrEMBLA0A4D6MDK32e-44A0A4D6MDK3_VIGUN; Uncharacterized protein
STRINGXP_007163338.16e-34(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-10GATA transcription factor 16