PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g07780.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 136aa    MW: 14973.2 Da    PI: 10.4022
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g07780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.1e-151046238
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                     +i n+s r+ tf kR++g++KK +ELS+LC+++++ i
  Vradi03g07780.1 10 FIVNDSARKATFKKRKKGLMKKVSELSTLCGIDACAI 46
                     799********************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.33E-18153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.544161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-15160IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003196.8E-161046IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTRKKVKLAF IVNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIDINR RIEVLTKNAQ  60
SQTQVAAPAV TDVAAKIEDK GQGSHSGQGF DINMDLMQKQ NWFMNLMNNG GGGNETMPFG  120
DVNHQNGFWP NPFFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIVNDSARKATFKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g07780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-137AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163366.18e-57hypothetical protein PHAVU_001G228600g
TrEMBLA0A4D6MAM13e-62A0A4D6MAM1_VIGUN; MADS-box transcription enhancer factor 2A
STRINGXP_007163366.13e-56(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.31e-18M-type_MADS family protein