PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g08220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 89aa    MW: 10384.7 Da    PI: 6.9717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g08220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-081760344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ +a  ++G +   +W+ Ia+++g  ++ +++k ++
  Vradi03g08220.1 17 SWTRLQNKQFEKALVLYGEErpdRWHNIAKEVG-DKSVEEVKRHY 60
                     69999*************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.471064IPR017877Myb-like domain
SMARTSM007179.8E-71466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-91570IPR009057Homeodomain-like
PfamPF002491.9E-61760IPR001005SANT/Myb domain
CDDcd001671.31E-61760No hitNo description
SuperFamilySSF466894.21E-121771IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MAANSLNMNN KEQRYPSWTR LQNKQFEKAL VLYGEERPDR WHNIAKEVGD KSVEEVKRHY  60
AILLEDVSRI ESGHVPIPEY KFSENMHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-2018831176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g08220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-125AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163428.13e-48hypothetical protein PHAVU_001G233900g
SwissprotQ1A1733e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A4D6MFC56e-49A0A4D6MFC5_VIGUN; Uncharacterized protein
STRINGXP_007163428.11e-47(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-28RAD-like 6