PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g09220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 232aa    MW: 26150.8 Da    PI: 7.1993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g09220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.4e-053789154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +r  + erE+  R+++N+ f  L   l   +   + + + Ka+iL++ ++ +k+L
  Vradi03g09220.1 37 KRIRKAEREKEKREQLNELFLGLAHTLEVtD--LKEQNNGKASILRESIRLLKDL 89
                     577889*********************9966..68889************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.8993689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-937111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-539103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MMGSETSATV VEKLNNSQDL SRKRSCSNKQ KQEKIPKRIR KAEREKEKRE QLNELFLGLA  60
HTLEVTDLKE QNNGKASILR ESIRLLKDLF SQIESLKKDS VSLLSETHYV TMEKNEMVEE  120
NCVLKSQIEK LAGEIEARVV QCGHNNLMNP FPEAEKITEF SGENLQLSST EAAVQQGHAV  180
LVVPVSTHHG PYNVIEQIPK PRSSITKPHP RYPTPMDSWP LQLLAEQPTS N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g09220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-157AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495708.11e-170transcription factor bHLH47 isoform X1
TrEMBLA0A1S3TPI51e-169A0A1S3TPI5_VIGRR; transcription factor bHLH47 isoform X1
STRINGGLYMA17G10740.16e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82232531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.37e-37bHLH family protein