PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g09270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 99aa    MW: 11102.8 Da    PI: 9.8577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g09270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.8e-0730751255
                     HHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS
              HLH 12 RRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55
                     R ++iN+ +  L+ llP++ ++++ +  +s ++i ++++ +I++Lq
  Vradi03g09270.1 30 RESDINDLLLMLQALLPQQNQTSNSRvsVSMMQIIKETCSHISMLQ 75
                     7789**************66666666569999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5811874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-72579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-72979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSIHIKVSTI AKLQTFSMSG RRKSRTSKFR ESDINDLLLM LQALLPQQNQ TSNSRVSVSM  60
MQIIKETCSH ISMLQKEVKE LGERVAELVN SAYTSDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g09270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-70AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138199.17e-39hypothetical protein PHAVU_009G188800g
TrEMBLA0A0L9VP056e-41A0A0L9VP05_PHAAN; Uncharacterized protein
STRINGXP_007138199.13e-38(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439