PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0403s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 279aa    MW: 31281 Da    PI: 9.0583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0403s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd +lv+ ++++G ++W++ +r  g+ R++k+c++rw +yl
  Vradi0403s00010.1 14 KGFWSPEEDRILVNHINKHGHKNWHALPRQAGLLRCGKSCRLRWINYL 61
                       688*****************************99************97 PP
2Myb_DNA-binding48.22.5e-1567112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T eE++ ++++++ lG++ W++Ia++++ gRt++++ + w+++l
  Vradi0403s00010.1  67 RGNFTSEEEDMIIQLHENLGNR-WSAIAAKLP-GRTDNEINNVWNTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.02961IPR017930Myb domain
SuperFamilySSF466894.23E-2911108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002497.3E-141561IPR001005SANT/Myb domain
CDDcd001672.24E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.5E-231768IPR009057Homeodomain-like
PROSITE profilePS5129423.8362116IPR017930Myb domain
SMARTSM007171.5E-1266114IPR001005SANT/Myb domain
PfamPF002493.9E-1467112IPR001005SANT/Myb domain
CDDcd001675.79E-969112No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCERL GLNKGFWSPE EDRILVNHIN KHGHKNWHAL PRQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TSEEEDMIIQ LHENLGNRWS AIAAKLPGRT DNEINNVWNT HLKKRLSQQD  120
KDTNQNQSLV RTQFSKQQQQ PVNALPTDHV IGTKEEKKAL SSPQCASSDV STLTTSTTST  180
TSDSRDHNSA SAIDHQHRLP VKPESLDDDF WSQVLSPGNS GHTASFPATG AGHRDFQCSL  240
SPLLTSKGVH AANAYDNVNF WELLKKTTLA QLKIYLDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0403s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521761.10.0transcription factor MYB4
TrEMBLA0A1S3VTP80.0A0A1S3VTP8_VIGRR; transcription factor MYB4
STRINGXP_007144899.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.14e-68myb domain protein 13