PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0421s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 100aa    MW: 11397.1 Da    PI: 11.2804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0421s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18756255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+Wv+eIr+p        +r++lg+f  ae+Aa+a+++a++ + g
  Vradi0421s00060.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFEKAEDAARAYDEAARLMCG 56
                       69******9.**********8.....334**********************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.8E-21195IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.77E-31666No hitNo description
SuperFamilySSF541713.53E-21766IPR016177DNA-binding domain
PROSITE profilePS5103220.495764IPR001471AP2/ERF domain
SMARTSM003805.1E-40770IPR001471AP2/ERF domain
PfamPF008474.0E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-34764IPR001471AP2/ERF domain
PRINTSPR003671.2E-10819IPR001471AP2/ERF domain
PRINTSPR003671.2E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFEKA EDAARAYDEA ARLMCGPKAR  60
TNFPYNPNEP RSSSSKLLSA TLTAKLHKCH TASLSFRVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17868667ATERF1
3gcc_A6e-17868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0421s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927831e-117BT092783.1 Soybean clone JCVI-FLGm-11B8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522637.13e-69ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW57e-59ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S3VWS06e-68A0A1S3VWS0_VIGRR; ethylene-responsive transcription factor ERF003-like
STRINGGLYMA15G00660.13e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-38ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]