PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g00400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 189aa    MW: 21513.1 Da    PI: 8.3326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g00400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ Fs+   L  H++ H
  Vradi04g00400.1 42 YSCSFCKRGFSNAQALGGHMNIH 64
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.8E-54066IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.25E-64068No hitNo description
PROSITE profilePS5015711.3854269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSSCYFPFTC QKKMEFNTPI YKKSEIRWSS DDQGGPGQVK SYSCSFCKRG FSNAQALGGH  60
MNIHRRDRAK LKQSSEESLL SLDISIKTSS DHSNDPSDLE EKIFFRLGSG EDQKHSRNRK  120
MPFNFPHKSD RDYASERGVF IGSAEIPHHL PSFVFGQRIE EKTADLDLEL RLGLYPQESA  180
TLNTRSFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g00400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497618.11e-139zinc finger protein ZAT6-like isoform X1
TrEMBLA0A1S3TV121e-137A0A1S3TV12_VIGRR; zinc finger protein ZAT6-like isoform X1
STRINGXP_007140495.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-16C2H2 family protein