PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g00980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 557aa    MW: 60274.8 Da    PI: 6.6305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g00980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09371418455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vradi04g00980.1 371 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 418
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17365435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-10365422No hitNo description
PROSITE profilePS5088815.663367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16367435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6371418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10373423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MENQFFLNAP QLHFDPSPPP CPPSWHSLSS PMDVQVLNCS TQRTHDSFYT PPWEDKSTDH  60
AVQFDSALSS MVSSPAASNS NMSTDNFVIR ELIGKLGNIG AGGSDEISPH SQPLLPASSY  120
INGNNSTNTS CYSTPLSSPP KLSLNKIPTM MNHLVKEGMP PSLNSSVAEF STDPGFAERA  180
AKFSCFGSRS FNGRTTQLGP SNAELTHRSS PLVENGKLPR VSSSPSLKVL GSQMSAQENK  240
NSPLQDQMEV ANSQEESTIS EQIPNGDNGM KPSPYANSRK RKGPSKGKAK ETSTPTNPPM  300
AAEASEDSNA KRSKANEGEG NENGQVKAEE ESKGVTSNTN DDKQNKSNSK PPEPPKDYIH  360
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ  420
VEFLSMKLAS VNTKLDFSIE SLISKDIFQS NNSLAQPIFP LDSSAPAFYG QHPQQNPAIH  480
SNIPNGTVSH TSVDPLDTGL CQNLGMQLSH LNAFNEGASQ YPIAFSEGDL HTIVQMGFGQ  540
TANRKTPVQS QSFNGN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g00980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311130.0KT031113.1 Glycine max clone HN_CCL_101 bHLH transcription factor (Glyma08g46040.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496615.10.0transcription factor bHLH62
TrEMBLA0A1S3TS670.0A0A1S3TS67_VIGRR; transcription factor bHLH62
STRINGXP_007140690.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-99bHLH family protein