PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g01640.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 257aa MW: 29183 Da PI: 8.6397

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g01640.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.5e-05	88	107	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Vradi04g01640.1 88 FSCPLCFKTFNRYNNMQMHM 107 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.06E-5	84	110	No hit	No description
PROSITE profile	PS50157	9.66	88	115	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-5	88	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.23E-5	154	192	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.3E-4	158	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MKVNREKERE ASISSNNNNN SLDDETVTVA LHLGLPTIPT TTASADSTSN TYSDREKAIA 60 SEYSPTRINK GQYWIPTPAQ ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPES 120 LRGTQPTAML RLPCYCCAPE CKNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCCKA 180 FAVRGDWRTH EKNCGKLWYC SCGSDFKHKR SLKDHIKAFG NGHKAYGIDC FDHDDEAASE 240 IEQENVNESL LSICHN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g01640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097140	0.0	BT097140.1 Soybean clone JCVI-FLGm-21L15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014497432.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-127	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S3TUK4	0.0	A0A1S3TUK4_VIGRR; zinc finger protein WIP2-like
STRING	GLYMA13G41570.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-127	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]