PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g02860.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 701aa    MW: 77203.4 Da    PI: 7.6782
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g02860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24112213199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + 
  Vradi04g02860.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RA 201
                      89****************************986445444..8************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Vradi04g02860.1 202 ENGDLCVGIRRA 213
                      88999****997 PP
2Auxin_resp109.53.5e-36268351183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++FevvY+Pra t+eF+++++ v+ a++++++ G Rfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  Vradi04g02860.1 268 AITLAANNQTFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGLRFKMPFETEDSSRISWfMGTIASVQVLDPIRWPNSPWRLLQ 351
                      567899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-38106215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-29107213IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-22111212No hitNo description
PROSITE profilePS5086313.169112214IPR003340B3 DNA binding domain
SMARTSM010192.4E-23112214IPR003340B3 DNA binding domain
PfamPF023622.6E-22112213IPR003340B3 DNA binding domain
PfamPF065075.7E-31268351IPR010525Auxin response factor
PROSITE profilePS5174512.768581667IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKETEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNLDFGAS RIPIPPLVLC  60
RVAAVKFLAD PETDEVFARL RLVPLRNTEL DHEDSDKVDG NGPEGSEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSSFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGVGG PEAPCGWSSG GGGIGPYGAF  240
SAFLREESKV VRNGCGRPKV SGESVREAIT LAANNQTFEV VYYPRANTPE FCIRTSAVRG  300
AMRIQWCSGL RFKMPFETED SSRISWFMGT IASVQVLDPI RWPNSPWRLL QVTWDEPDLL  360
HNVKRVSPWL VELVSNIPVI HLAPFSPPRK KLRFPQHPEF PLDVQFPIPT FSGNPFGSST  420
SSPLCCLSDN APAGIQGARH AQIGISLSDL HLNHNKLQLG LLPTNVRQLD LQNGISNVNI  480
TNHGKSKESL SCLLTMGSPR KSLEKSDQVK THQFLLFGQP ILTEQQISRS SSDVLSQNCT  540
ATDDENKEKK EMGFLSDSQS SVSPGKSSST AEFSWQLGSD TSHCKVFMDT EDVGRTLDLS  600
CLASYDELYM RLATMFGIER SEMLSHVLYR DATGALKQTG EEPFRDLALC SEFTKTAKRL  660
TILSDSSSKD SRRVWITGTR NAEHGLDATS NKTGPMSIFA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-81837251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g02860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498338.10.0auxin response factor 16
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3TX600.0A0A1S3TX60_VIGRR; Auxin response factor
STRINGXP_007150194.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]