PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g02990.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 130aa MW: 14187.2 Da PI: 6.9435

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g02990.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.6	1.3e-31	3	67	9	73
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++h kv+gRdRRvRlsa caar+F+L++eLG ++d++tieWLl +a+pai ++tgt+ ++ + Vradi04g02990.1 3 RDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLHKAEPAIVAATGTGIVPSITS 67 69*******************************************************77666333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.081	2	56	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.7E-27	2	71	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MKRDRHIKVN GRDRRVRLSA ICAARIFQLT RELGKKTDGE TIEWLLHKAE PAIVAATGTG 60 IVPSITSSVD SAATLMANTT TTLVPLDTIA AQDTNLVTIA AVARTEQPIP PFHFDFEWMQ 120 HSDLGFCDN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g02990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-164	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014496711.1	1e-92	transcription factor TCP20-like
Swissprot	O64647	3e-29	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A1S3TSE8	3e-91	A0A1S3TSE8_VIGRR; transcription factor TCP20-like
STRING	XP_007150170.1	8e-73	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	5e-31	TCP family protein