PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 147aa    MW: 16502.9 Da    PI: 9.4082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Vradi04g03090.1 14 RGPWSPEEDSKLKDYIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23565IPR009057Homeodomain-like
PROSITE profilePS5129421.016966IPR017930Myb domain
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002491.2E-161462IPR001005SANT/Myb domain
SuperFamilySSF466892.12E-201589IPR009057Homeodomain-like
CDDcd001673.01E-91662No hitNo description
PROSITE profilePS500904.8446397IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-76694IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKDYIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANIGSRT KSLWSVLVPC SITPPQTVPW LCLEVKQAAV  120
PLMGAAARSA HEQVDGESRQ RESRWR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g03090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945874e-93BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423707.13e-61PREDICTED: transcription factor RAX2-like
SwissprotQ9SJL76e-55RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A0L9UNN98e-60A0A0L9UNN9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SGL58e-60A0A0S3SGL5_PHAAN; Uncharacterized protein
STRINGGLYMA13G39760.13e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-57MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]