PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 252aa    MW: 27169.8 Da    PI: 8.3064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054121143123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Vradi04g03180.1 121 YECKTCNRTFPSFQALGGHRASH 143
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.71E-5120147No hitNo description
PfamPF139122.1E-13120145IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLSEISDMEG MAMEELVSCN NDPTNIAKGK RTKRRLRPLS PCVVNAVTAT AAAMTSSCSS  60
ASGGGGGSFS SITLEEEEED MANCLILLAQ GRGGSDPLHH KDLCDDVKTE KGGSKIEFYV  120
YECKTCNRTF PSFQALGGHR ASHKKPKVEE KKSPPPSSSP QLFNFEETKV NHMKISPSVS  180
LQLGCGNNRG GLNFHGNKSK IHECSICGSA HTKVDAPKKD TGESETTKKR LIRSFQSRPD  240
NGIMRCPCPF L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g03180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497090.11e-120zinc finger protein 1
TrEMBLA0A1S3TTL51e-119A0A1S3TTL5_VIGRR; zinc finger protein 1
STRINGXP_007150141.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-20C2H2 family protein