PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 214aa    MW: 23174.3 Da    PI: 6.9062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-06188210223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       C+ C+ksF++ s L++H +  H
  Vradi04g03360.1 188 ICKSCSKSFNSESGLQQHTKAkH 210
                      6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-5179209No hitNo description
PROSITE profilePS5015711.822187213IPR007087Zinc finger, C2H2
PROSITE patternPS000280189210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEFWGAEVKV GESVKVDPTE FEACIHLSQA ALGEAKKDKP NEPVVLYLKV GEQKVVLGTL  60
SREKIPQISL ELVLEKEFEL SHIFFLDFCC VLAGTSEEDE FTDSDEDIPL VNTENGTCFF  120
LIADLGKKRP NESASKTPVS SKKAKNATPE KKDGKKNLKA ETPQSVKKGG KTPSSEAKDK  180
SPKSGGLICK SCSKSFNSES GLQQHTKAKH GGQ*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g03360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976767e-71BT097676.1 Soybean clone JCVI-FLGm-22K12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497109.12e-65histone deacetylase HDT1
SwissprotQ8LJS23e-40HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A1S3TTN24e-64A0A1S3TTN2_VIGRR; histone deacetylase HDT1
STRINGXP_007150109.12e-61(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-23histone deacetylase 2C