PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 598aa    MW: 66813.6 Da    PI: 5.3371
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.91.2e-20508593283
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ +t+ed  ++r+W+++++y  ++ks++y+l+ ++ +Fv+angL+egDf+v++
  Vradi04g04140.1 508 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISITMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY 593
                      79*************************999999********7778*********777777777777.******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-27502595IPR015300DNA-binding pseudobarrel domain
CDDcd100155.93E-34505596No hitNo description
SuperFamilySSF1019363.34E-23506595IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603507597IPR003340B3 DNA binding domain
SMARTSM010195.5E-15507597IPR003340B3 DNA binding domain
PfamPF023624.3E-17508593IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MHDQFDATAL SSTASMEISQ QQNPDPGLGG SVGECMEDVM DTFGYMELLE ANDFFDPASI  60
FENEESENPL IEFGSLEEQV SLQEGQQEMM HQRENIEDDR KVPVCEEIKG EEDGGDGGGG  120
VVDDEMSNVF LEWLKSNKDS VSANDLRNVK LKKATIESAA KRLGGGKEAM KQLLKLILEW  180
VQTSHLQNKR RKDNSDNVND PLQAQIQDPS AQNNQNTHTS GSFAPESNSC FNNQTPWLSP  240
QTFGTDQTPI MVPSQPYSQP MVGYVGDPYT SGSPSNNITA THNHNNNNPY QPGTDQYHML  300
ESAHSWPHSQ FNVPSPYNQS YGDNGLFTPG GFGGYGNNQY PYQFFHGPGD KLMRLGPSAT  360
KEARKKRMAR QRRFLSHHRN HNGNHHQNQG SDPHTRLGSD NCTTGLVAPH QANSAAANWM  420
YWQAMAGGSA GPLAQVVPTD PLAGQTVVDR STMHTQNSHQ NRAASDRRQV GEPYFDHKLM  480
LDDLFGLNHY VFDQQGWKPE KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE THLPELEARD  540
GISITMEDIG TSRVWNMRYR YWPNNKSRMY LLENTGDFVR ANGLQEGDFI VIYSDVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-37503596194B3 domain-containing transcription factor FUS3
6j9b_D6e-37503596194B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496746.10.0B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLA0A1S3TSI20.0A0A1S3TSI2_VIGRR; B3 domain-containing transcription factor ABI3 isoform X2
STRINGXP_007140552.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-119B3 family protein