PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 132aa    MW: 15479.2 Da    PI: 6.0886
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-0922442246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                     + W++Ia+ ++ gRt++++k++w++
  Vradi04g04360.1 22 R-WSKIAKQLP-GRTDNEIKNFWRT 44
                     5.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.94E-9852IPR009057Homeodomain-like
PROSITE profilePS500906.4581046IPR017877Myb-like domain
CDDcd001672.85E-71444No hitNo description
PfamPF002492.3E-72144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-112246IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEVGTLLHLW CSNERKLLLE FRWSKIAKQL PGRTDNEIKN FWRTRIQKHM KQSESFQQQS  60
NSERNDHQAF TSQVTTIAEP METYSPSCYQ GMLEPFSTQF HTNPDQSSCC TNDNNNYWSM  120
EDILSMQLAN Y*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-179AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497598.19e-78myb-related protein 305-like
SwissprotP813911e-21MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S3TUZ22e-76A0A1S3TUZ2_VIGRR; myb-related protein 305-like
STRINGXP_007140964.11e-71(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.19e-18myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]