PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 178aa    MW: 19802.9 Da    PI: 9.8045
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP92.73.7e-29101169378
                      SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +vegC++ l +ak+yhrrhkvCe+hskap+v+v gleqr       fh +sefD++krsCrrrLa+hnerrrk+++
  Vradi04g04530.1 101 HVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQR-------FHVVSEFDDSKRSCRRRLAGHNERRRKSSH 169
                      69***********************************97.......7**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114122.86397167IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.1E-21101154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-28101172IPR004333Transcription factor, SBP-box
PfamPF031109.8E-21101166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDFPGNIFCL SNRDQNGNTN ANTFAWDSWQ TTTSNNNNTT STFLNAFNAP VTALTAPEGS  60
AANRPEPAGL ASALMFLPQN AGVLRHRHQH QQHPYGGDGS HVEGCQVALV NAKDYHRRHK  120
VCEMHSKAPK VVVLGLEQRF HVVSEFDDSK RSCRRRLAGH NERRRKSSHD SVARNSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-211021661384squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-121AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019431619.12e-63PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
RefseqXP_019431620.12e-63PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
TrEMBLA0A394DBX07e-62A0A394DBX0_LUPAN; Uncharacterized protein
STRINGXP_007140980.12e-42(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.16e-27squamosa promoter binding protein-like 3