PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g05840.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 152aa    MW: 16622.8 Da    PI: 4.4895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g05840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.5e-056431154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +RR+ + + +++Lr++  +      + l+Ka+i   A +YI +L
  Vradi04g05840.1  6 KRRESLEQTLQQLRDVTNS------TALNKASIIADASKYIEEL 43
                     7999999999999998655......46**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-6658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-7654IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.03282151IPR002912ACT domain
CDDcd048730.0013988147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MASRDKRRES LEQTLQQLRD VTNSTALNKA SIIADASKYI EELKQKVEGL NSELGITESS  60
SNSQIDELPA VTVKTLKKGF LINVLLEKNS PGMLVSVLEA FEELGLDVLD ARVSCEDSFQ  120
LEAVGRESDK NDSVDAQVVK QAVLRAIKKE D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g05840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0923091e-170BT092309.1 Soybean clone JCVI-FLGm-10J13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497567.21e-103transcription factor SCREAM2-like
TrEMBLA0A1S3TUY61e-101A0A1S3TUY6_VIGRR; transcription factor SCREAM2-like
STRINGXP_007140138.13e-96(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF7241015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-12bHLH family protein