PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g07100.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 254aa MW: 27498 Da PI: 5.906

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g07100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	50.4	4.4e-16	76	123	12	59
EE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 12 qKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +K++ + +YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+ Vradi04g07100.1 76 KKTILDCA-MLGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 123 55555544.368***998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03106	3.2E-13	75	123	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.4E-15	75	125	IPR003657	WRKY domain
SMART	SM00774	1.3E-12	75	124	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-13	85	125	IPR003657	WRKY domain
PROSITE profile	PS50811	20.541	86	125	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSFAGLSSAN LSLSRCKPLP PCPHSLPILL RLPKRFHLKR SNNNSETSSH SLSPPHDLKE 60 GTKVRACFVL IPPKGKKTIL DCAMLGYYRC SSSKGCLARK QVERNRSDPT MFIVTYTAEH 120 NHPAPTHRNS LAGSTRQKPL APQTATAEQD SDKIKSLTKP SSPATSGAEE EVPAQVEKSE 180 SREEKEDVMD DEEEDEFVLS DMVLTDDFFE SLDELSQLTA PSVVTGDCFS DPFSAMAIPS 240 WVASGAATAG GCI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g07100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014496549.1	1e-118	WRKY transcription factor 22
Swissprot	O04609	1e-43	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A1S3TS05	1e-117	A0A1S3TS05_VIGRR; WRKY transcription factor 22
STRING	XP_007139781.1	2e-99	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4205	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	9e-42	WRKY family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]