PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 148aa    MW: 16688.3 Da    PI: 10.639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.1e-145193246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +++Tt+E++l++++++  G++ W+ Ia+ ++ gRt++++k +w++
  Vradi04g07220.1 51 DNFTTQEEDLIIKLHAAIGSR-WSIIAQQLP-GRTDNDVKIYWNT 93
                     68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.217740IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-61554IPR009057Homeodomain-like
SuperFamilySSF466891.66E-161591IPR009057Homeodomain-like
PROSITE profilePS5129417.7134599IPR017930Myb domain
SMARTSM007173.1E-124997IPR001005SANT/Myb domain
PfamPF002491.4E-125293IPR001005SANT/Myb domain
CDDcd001679.20E-95295No hitNo description
Gene3DG3DSA:1.10.10.602.1E-195599IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVRSPCEQDT KKLAFGSKHG SGNWTSVPRK TRLKRCGKSC SRLRWTDLKH DNFTTQEEDL  60
IIKLHAAIGS RWSIIAQQLP GRTDNDVKIY WNTKLKKKLS QMGIDPVTHK PFSKLIADYG  120
NIGGCQKPRK RHPGFKGECG DHTACLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-151995108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g07220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150353e-84AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635254.13e-92transcription factor MYB35 isoform X1
SwissprotQ9LSI72e-45MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A3Q0EXW06e-91A0A3Q0EXW0_VIGRR; transcription factor MYB35 isoform X1
STRINGGLYMA04G34631.12e-69(Glycine max)
STRINGXP_007138144.14e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.16e-48MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]