PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g07270.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 218aa MW: 23631.6 Da PI: 9.0806

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g07270.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45	2.5e-14	4	48	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky Vradi04g07270.1 4 PWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 48 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.5E-8	1	51	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.261	1	53	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.2E-16	3	51	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.88E-16	3	53	IPR009057	Homeodomain-like
CDD	cd00167	3.86E-10	4	49	No hit	No description
Pfam	PF00249	1.4E-11	4	48	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	4	48	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGIPWTEEEH KLFLVGLQKV GKGDWRGISR NYVKTRTPTQ VASHAQKYFL RRTNLNRRRR 60 RSSLFDITTD SVSTTPMEEG QIQYQDNLSL VHPVYPVTAE GSNMNGFSKL PMYSNDIGTG 120 VMSAQAGNPM KILTLGQGNV EQNGPSTKLV CTTAPIVPDY IGSTASDITA TSLSSLDPPT 180 LSLGLSLSSS QRQTSSIHSA FHSLSCFNNG DSFITVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g07270.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014498254.1	1e-161	transcription factor MYB1R1 isoform X2
Swissprot	Q2V9B0	8e-43	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1S3TWU1	1e-159	A0A1S3TWU1_VIGRR; transcription factor MYB1R1 isoform X2
STRING	XP_007138137.1	1e-117	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	2e-32	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]