PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07860.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 215aa    MW: 24340.1 Da    PI: 9.0211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309e-1053100355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++  ++  L   +P +     k+++Ka +L++Av+Y ++Lq
  Vradi04g07860.1  53 QHHIIAERKRRQELTGSIIALSATIPGL-----KRMDKAYVLREAVNYTRQLQ 100
                      6799************************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.84E-748104No hitNo description
PROSITE profilePS5088813.7195099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1452118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-753100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1354113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-956105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEDSLENWIS DLLGSSLKGS CSKRGGAMVK DGSQFEPAMA QPRKRVRRSR ETQHHIIAER  60
KRRQELTGSI IALSATIPGL KRMDKAYVLR EAVNYTRQLQ ERVKELENKN SEKRVVHHSS  120
TLVRKCEVSE KKNLSNSSES NKESLFEVEA RVLDEEILIG IHCEKQKDIV CNILAFLEKL  180
HLSPTSSSVL PFGTCTLIIH IIAQVQIEFF ELLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14262RKRVRRSRETQHHIIAERKRR
25863ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g07860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-179AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497287.11e-139transcription factor NAI1 isoform X1
RefseqXP_022635663.11e-139transcription factor NAI1 isoform X2
TrEMBLA0A1S3TU601e-138A0A1S3TU60_VIGRR; transcription factor NAI1 isoform X1
TrEMBLA0A3Q0EVA21e-138A0A3Q0EVA2_VIGRR; transcription factor NAI1 isoform X2
STRINGGLYMA18G48126.16e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-33bHLH family protein