PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07870.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 256aa    MW: 28573.5 Da    PI: 7.6002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-1184131254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+ h  +Er+RR+++ + + eL  ++P +     kK +K +++++Av+Y+k L
  Vradi04g07870.1  84 RQHHILAERKRREELTNNIVELSAIIPGL-----KKRDKGSVVREAVDYVKRL 131
                      899**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.05682131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1483149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.41E-1184136No hitNo description
PfamPF000104.6E-984131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1484147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-988137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDDFFNQSHM VHCNEDESLK DIIVFSPESN IPSSSSLQSN FNSKTSSFSA AHVFCFDNPN  60
SEAHQNHPSK STTQSQNAIS RADRQHHILA ERKRREELTN NIVELSAIIP GLKKRDKGSV  120
VREAVDYVKR LKERVKELEN QKKDNMNSIG SLTKKPTLSI SVEEELPEMK ISVSDREVLI  180
GIFCHNPNNT LVKVLSLLDN LHLSTTCSSV LPFGTSTFKV TIIAKMNDEY SMTIDDLIKA  240
VGGCLLNLKS QKVLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g07870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-139AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416413.11e-151PREDICTED: transcription factor bHLH18-like
TrEMBLA0A3Q0EZU92e-76A0A3Q0EZU9_VIGRR; transcription factor bHLH25-like
STRINGGLYMA18G48143.16e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1872846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-37bHLH family protein