PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 224aa    MW: 24703.6 Da    PI: 7.7067
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.85.9e-0676116356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+ ++tkeq  +Lee F+++++++               rqV vWFqNrRa+ k
  Vradi04g08400.1  76 KKLRLTKEQSMVLEETFKEHNTLNP-------------PRQVEVWFQNRRARTK 116
                      6667778888888888888887775.............69************98 PP
2HD-ZIP_I/II86.14.6e-2875152192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rl+keq+ +LEe+F+e+++L+p             prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +lk
  Vradi04g08400.1  75 RKKLRLTKEQSMVLEETFKEHNTLNP-------------PRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELR-ALK 152
                      69***********************9.............99**********************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.7E-8742IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466895.99E-1257119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-458100IPR009057Homeodomain-like
SMARTSM003893.2E-573122IPR001356Homeobox domain
CDDcd000861.46E-875119No hitNo description
PROSITE profilePS500719.28101118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-5101121IPR009057Homeodomain-like
SMARTSM003406.6E-26118161IPR003106Leucine zipper, homeobox-associated
PfamPF021838.3E-12118152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
RSSDVIRVID VKSTVECEED NGISSPNSAV SSVSGSKRSE RDDDNAALVA SGERTSCSRG  60
SDDDDGGGGD CEGGRKKLRL TKEQSMVLEE TFKEHNTLNP PRQVEVWFQN RRARTKLKQT  120
EVDCEYLKRC CENLTEDNRR LQKEVQELRA LKSSPQMYMH MNPPTTLTMC PSCERGHSSS  180
TSSPAAAVHP AVVPPTPRKL FGANIRRPVA VNTWPFDGSI PRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g08400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-151AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497427.11e-138homeobox-leucine zipper protein HAT3 isoform X1
SwissprotP466025e-71HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1S3TUJ91e-137A0A1S3TUJ9_VIGRR; homeobox-leucine zipper protein HAT3 isoform X1
STRINGXP_007139620.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.14e-58homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]