PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 502aa    MW: 54602.4 Da    PI: 6.3274
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96e-40135195262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ss
  Vradi04g08830.1 135 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKSSS 195
                      7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-30132192IPR003851Zinc finger, Dof-type
PfamPF027013.0E-32137193IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.845139193IPR003851Zinc finger, Dof-type
PROSITE patternPS013610141177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSEPKDPTIK LFGKTIPLSE IPAGSDGAPA SSSDDLVDDS LEHSHASSSN SSRESHTREE  60
GLVEKDSMGE KPADDKKEAP TQSLEEVNNP DTVSGTCEES ITEPTDKETT TLKTSKTEEE  120
LSETSKSQDN NLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR  180
NVPIGAGRRK NKSSSSHYRQ ITVPDAALQN PPLDLPNGAY HPSLKCNGAV LTFGSDTPLC  240
ESMASVLNLA DKTVHNYARN GFYKAEELKV PVPHASGEKR DDQSSKSSVT STKSLEGAST  300
NGAQEQAMPN CHRFPPQVPY YTGNSWPIPW NPVQWSSPVS PPTFCPPGFA MPLYPAAVYW  360
GCAVSGAWNI PWVAQPSSPK GATSNSGSNS PTLGKHSRED NILKSNESGG GEDGHNKENN  420
KEKCLWVPKT LRIDDSGEAE KSTIWTTLGI KNDKADSVPR ETLFEGFPSK LDEKNHSIKA  480
SPVLQANPAA LSRSLKFHET S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g08830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635722.10.0cyclic dof factor 2
TrEMBLA0A3Q0F0110.0A0A3Q0F011_VIGRR; cyclic dof factor 2
STRINGXP_007139523.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.28e-95cycling DOF factor 2