PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g09510.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 248aa    MW: 28440.3 Da    PI: 8.3558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g09510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++v ++G g+W+++a+  g++R++k+c++rw +yl
  Vradi04g09510.1 16 KGPWTGEEDKLLSEYVSLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding45.41.9e-1470113247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g  T+ E+  + ++++ lG++ W+tIa++++ gRt++++k++w+++
  Vradi04g09510.1  70 GQLTPLEEGTIMELHAILGNK-WSTIAKYLP-GRTDNEIKNYWRTH 113
                      667999999************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5631167IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-221266IPR009057Homeodomain-like
SuperFamilySSF466894.12E-3113110IPR009057Homeodomain-like
SMARTSM007179.3E-171565IPR001005SANT/Myb domain
PfamPF002496.8E-171663IPR001005SANT/Myb domain
CDDcd001673.17E-121863No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2267116IPR009057Homeodomain-like
SMARTSM007172.6E-1068116IPR001005SANT/Myb domain
PROSITE profilePS5129417.42668118IPR017930Myb domain
PfamPF002498.4E-1369113IPR001005SANT/Myb domain
CDDcd001673.62E-873114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVAMMGCLAT EKGWKKGPWT GEEDKLLSEY VSLYGEGRWS SVAKFTGLNR SGKSCRLRWV  60
NYLKPGLKKG QLTPLEEGTI MELHAILGNK WSTIAKYLPG RTDNEIKNYW RTHFGKREKS  120
KHKKLQRRQK EQQQQPEKCD LKSIMCHKDT MNGTKSFETQ NSKLQEIGLM NPTIDDQYNN  180
TVPSMHEGFS STWPDTLVDD GLWFGLWDFD EPLMSFADYV NQFSKCVMPN EGTQSHVKTS  240
CFDDIFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271611027120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g09510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496890.20.0myb-related protein 340
TrEMBLA0A1S3TT170.0A0A1S3TT17_VIGRR; myb-related protein 340
STRINGXP_007139421.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-60myb domain protein 121