PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g09530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 25831.8 Da    PI: 11.0881
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g09530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-2854104151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Vradi04g09530.1  54 KRIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSS 104
                      79***********************************************96 PP
2K-box52.52.1e-181041583387
            K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                      +e R++lG++L++LslkeLq+LeqqL++slk+iR++K + l eq ++l k++++ 
  Vradi04g09530.1 104 SERRNFLGNGLDPLSLKELQSLEQQLDTSLKRIRTRKARTLQEQNSKLAKMKEKG 158
                      678*****************************************99987766654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.85246106IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-3746105IPR002100Transcription factor, MADS-box
CDDcd002651.89E-3447104No hitNo description
SuperFamilySSF554554.19E-2747106IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-294868IPR002100Transcription factor, MADS-box
PfamPF003192.3E-2455102IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-296883IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-2983104IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.28585171IPR002487Transcription factor, K-box
PfamPF014861.6E-14102156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGPTSSYGLS PNVKPCQHDT SLLFNSISTT HRTSSFPPIT TRQRIMGRGR VQLKRIENKT  60
SQQVTFSKRR TGLLKKANEI SVLCDAQVAL IMFSTKGKLF EYSSERRNFL GNGLDPLSLK  120
ELQSLEQQLD TSLKRIRTRK ARTLQEQNSK LAKMKEKGKT LTERPQSVPE TLGQNSTNLN  180
LASPQLLPPQ RLVPSLTLSG PLQGRATMEE MGEPQTVPTG HSLIPPWMLH I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-1746104159MEF2C
5f28_B1e-1746104159MEF2C
5f28_C1e-1746104159MEF2C
5f28_D1e-1746104159MEF2C
6byy_A8e-1846104159MEF2 CHIMERA
6byy_B8e-1846104159MEF2 CHIMERA
6byy_C8e-1846104159MEF2 CHIMERA
6byy_D8e-1846104159MEF2 CHIMERA
6bz1_A8e-1846104159MEF2 CHIMERA
6bz1_B8e-1846104159MEF2 CHIMERA
6bz1_C8e-1846104159MEF2 CHIMERA
6bz1_D8e-1846104159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g09530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-94AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635767.11e-119truncated transcription factor CAULIFLOWER A
SwissprotD7SMN61e-49FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A3Q0F0581e-117A0A3Q0F058_VIGRR; truncated transcription factor CAULIFLOWER A
STRINGXP_007139418.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-35AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]