PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g09650.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 343aa    MW: 38344.3 Da    PI: 4.8061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g09650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.16.4e-184796255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Vradi04g09650.1 47 RSKHSETEQRRRSKINERFQVLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 96
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-2344116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-2044123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.2954595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-1747100No hitNo description
PfamPF000102.6E-154796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1351101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MARSAKGHQE ELEDDEEEEF LTANTSTSLN KVKVDEPSTG KRGNTHRSKH SETEQRRRSK  60
INERFQVLRD LIPQNDQKRD KASFLLEVIE YIQFLQDKLQ IYEKSYEGWS QEPTKLIPWR  120
NHHAPAENTT DPSQTIQNGS VDEKNNSVSP LFPGNVPNPM ESDFSMLTVQ KGHIPGSSTE  180
AVPLTMQMRL DMFDPGVSSG MATQHLQESV SNVDMHSPTQ PQLWLDKSNK GNYILPHDST  240
MKEQEELVIE SGSDSISSAY SQGILDTLTQ VLQSSGVDMS QTNLSVQIDV GRRANAGLIP  300
SAYSSKVHEN QFESNPAISV SGFDYCNIES EQSSKRLRQE AS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g09650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311270.0KT031127.1 Glycine max clone HN_CCL_217 bHLH transcription factor (Glyma18g51080.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496939.10.0transcription factor BIM2
TrEMBLA0A1S3TT650.0A0A1S3TT65_VIGRR; transcription factor BIM2
STRINGXP_007139391.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-61BES1-interacting Myc-like protein 2