PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g10030.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 200aa MW: 22305.1 Da PI: 9.7472

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g10030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.8	2.7e-40	21	125	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s+ s+ +++s+ + ++ + Vradi04g10030.1 21 TAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfSSSSDDVDGGV---Prdddfn 111 78**************************************************************66655333222222222221...1222444 PP TCP 89 .............k 89 + Vradi04g10030.1 112 vieesivikrklkH 125 44455554444431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.6E-38	21	120	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.401	23	81	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MLNQDLGGAL YGITKKPAKK TAKKDRHSKI HTSQGLRDRR VRLSIEIARK FFDLQDMLGF 60 DKASNTLDWL FTKSKKAIKE LTRSKHSADS FEFSSSSDDV DGGVPRDDDF NVIEESIVIK 120 RKLKHSLMSS IHHQNAVIPK EATVNNSDYH SFPNLSPNWE ANNAANGRSN FCAIASMNLS 180 AGLQIFGKSW EECTNPHPT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g10030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-159	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014497254.1	1e-68	transcription factor DICHOTOMA-like isoform X1
TrEMBL	A0A1S3TU29	2e-67	A0A1S3TU29_VIGRR; transcription factor DICHOTOMA-like isoform X1
STRING	XP_007139331.1	1e-63	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	8e-28	TCP family protein