PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g10580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 162aa    MW: 17542.8 Da    PI: 9.3007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g10580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00132345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  Vradi04g10580.1 23 FECKTCNRQFPSFQALGGHRASH 45
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.58E-92193No hitNo description
PfamPF139122.5E-132247IPR007087Zinc finger, C2H2
SMARTSM003550.162345IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8272350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
PfamPF139125.4E-107095IPR007087Zinc finger, C2H2
SMARTSM003550.57193IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0787198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MLLSRGGEFE ATYSSSSMSN RVFECKTCNR QFPSFQALGG HRASHKKPRL MPGDNSEGQL  60
LHDSPPKPKT HECSICGLEF AIGQALGGHM RRHRAANLNG NLHNSTTVSS SSGGSSSIDS  120
STKNKVPNKR VLVLDLNLTP FENDLEILKI GKPTALVDYL Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g10580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497471.11e-117zinc finger protein ZAT11
SwissprotQ9SLD41e-29ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3TUJ61e-115A0A1S3TUJ6_VIGRR; zinc finger protein ZAT11
STRINGGLYMA18G52410.11e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-31C2H2 family protein