PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g10750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 335aa    MW: 35775.8 Da    PI: 6.9814
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g10750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.4e-3949109262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +++alkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Vradi04g10750.1  49 PDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 109
                      68899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-244998IPR003851Zinc finger, Dof-type
PfamPF027013.5E-3351107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5953107IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEDEVDHTAW IPLIVEEAAA VVGIEGEADL EGPKVAEAGG GVEGGIHQPD AALKCPRCES  60
ANTKFCYYNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG GCRRNKRSKG SGGRSKSPMK  120
PSTGSTSASA NSSSSGCTTD HVMMTHLPTP TQTQFPFLTS LHHYNSDYVS GGIGSHFGTI  180
TTTPLVGRNS SDVEFQIGTG SASSLGNSGG AMLSNGLSEQ WRLNNLQQVQ QQFPFLSTNL  240
EPQIGLFQFG GGENNNAEPP SYAKEGGRFN IRSKIDSISS LSGLMPQVNT IKMEENQGLN  300
LPKNLLMGND ALWNGSGNAW SEVPCFTPSN NHLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g10750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635816.10.0dof zinc finger protein DOF2.4 isoform X2
TrEMBLA0A3Q0EXD60.0A0A3Q0EXD6_VIGRR; dof zinc finger protein DOF2.4 isoform X2
STRINGXP_007139234.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-29DNA binding with one finger 2.4