PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0513s00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 553aa    MW: 61451.9 Da    PI: 5.9288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0513s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.65.2e-971965513374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        ++L++ Ae +++g+  +aq +Larl+++ sp g+p+qR+a+y++eAL + l++   +  + ++ s+    + + ++ a+k fse+sP+l+f+
  Vradi0513s00010.1 196 DQLYQTAELIEAGNPVRAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQFA 281
                        68**************************************************9...44444445555...59******************** PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                        ++t+Nqa+ eave+ +r+H+iDfdi+ G+QW +++q++a R++ +psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fef+vl  ++l
  Vradi0513s00010.1 282 NFTCNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQEIALRSSAAPSLKVTAIVSPSTCDEVELNFTKENLMQYAKDINVSFEFSVLNIESL 373
                        ***************************************************************************************99999 PP

               GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        ++ +   L ++  +Ea+aVn+ +   ++ +++       ++ L++vk+l+Pkvvv  ++ +d+ + s+ +  ++ l++ysal+dsl+a    
  Vradi0513s00010.1 374 HSPSSPLLgQFFDNEAIAVNMPV--SSFINNPSLF----PSALHFVKQLRPKVVVTLDRICDRIDVSLPTNAVHVLQCYSALLDSLDAV-NV 458
                        9998888866778*********9..5565444444....46*********************************************665.34 PP

               GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                        + +  +k+Er++++++i++++   + +    +e+l  Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+s
  Vradi0513s00010.1 459 NLDVLQKIERHFIQPAIKKIILGHHHS----QEKLPPWRNLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELIS 546
                        66999*****************99998....9************************************************************ PP

               GRAS 370 vSaWr 374
                        vS Wr
  Vradi0513s00010.1 547 VSTWR 551
                        ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.956168531IPR005202Transcription factor GRAS
PfamPF035141.8E-94196551IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDDWEGQDQS ILRLIMGDVE DPSAGLSKLL QSTACGSQSV DFNAGFGVVD QGLNMVSGAI  60
DPSGNYPAGF PFIAENIDAH NGKPGSVAGQ VSESVVFSAN NPLMVSSSVS PGVFTSQQQH  120
EFGVVDEKPQ VINPQFMLNQ NQVQFSENPS FFVPLMYPQV QEQQVFPQHQ AKRPLFDTIG  180
HNYQAPSHQL QQAIFDQLYQ TAELIEAGNP VRAQGILARL NHQLSPIGKP FQRAAFYMKE  240
ALMSLLHSNA HSFMAFSPIS FIFKIGAYKS FSEISPVLQF ANFTCNQALI EAVERFDRIH  300
VIDFDIGFGV QWSSFMQEIA LRSSAAPSLK VTAIVSPSTC DEVELNFTKE NLMQYAKDIN  360
VSFEFSVLNI ESLHSPSSPL LGQFFDNEAI AVNMPVSSFI NNPSLFPSAL HFVKQLRPKV  420
VVTLDRICDR IDVSLPTNAV HVLQCYSALL DSLDAVNVNL DVLQKIERHF IQPAIKKIIL  480
GHHHSQEKLP PWRNLFLQSG FSPFTFSNFT EAQAECLVQR APVRGFHVER KPSSLVLCWQ  540
RKELISVSTW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2920055025378Protein SCARECROW
5b3h_A1e-2920055024377Protein SCARECROW
5b3h_D1e-2920055024377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0513s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522977.10.0scarecrow-like protein 6
TrEMBLA0A1S3VXQ00.0A0A1S3VXQ0_VIGRR; scarecrow-like protein 6
STRINGXP_007134753.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-136GRAS family protein