![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Vradi0513s00010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
| Family | GRAS | ||||||||
| Protein Properties | Length: 553aa MW: 61451.9 Da PI: 5.9288 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 316.6 | 5.2e-97 | 196 | 551 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
++L++ Ae +++g+ +aq +Larl+++ sp g+p+qR+a+y++eAL + l++ + + ++ s+ + + ++ a+k fse+sP+l+f+
Vradi0513s00010.1 196 DQLYQTAELIEAGNPVRAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQFA 281
68**************************************************9...44444445555...59******************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
++t+Nqa+ eave+ +r+H+iDfdi+ G+QW +++q++a R++ +psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fef+vl ++l
Vradi0513s00010.1 282 NFTCNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQEIALRSSAAPSLKVTAIVSPSTCDEVELNFTKENLMQYAKDINVSFEFSVLNIESL 373
***************************************************************************************99999 PP
GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
++ + L ++ +Ea+aVn+ + ++ +++ ++ L++vk+l+Pkvvv ++ +d+ + s+ + ++ l++ysal+dsl+a
Vradi0513s00010.1 374 HSPSSPLLgQFFDNEAIAVNMPV--SSFINNPSLF----PSALHFVKQLRPKVVVTLDRICDRIDVSLPTNAVHVLQCYSALLDSLDAV-NV 458
9998888866778*********9..5565444444....46*********************************************665.34 PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
+ + +k+Er++++++i++++ + + +e+l Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve + slvl+W++++L+s
Vradi0513s00010.1 459 NLDVLQKIERHFIQPAIKKIILGHHHS----QEKLPPWRNLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELIS 546
66999*****************99998....9************************************************************ PP
GRAS 370 vSaWr 374
vS Wr
Vradi0513s00010.1 547 VSTWR 551
****8 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.956 | 168 | 531 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.8E-94 | 196 | 551 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 553 aa Download sequence Send to blast |
MDDWEGQDQS ILRLIMGDVE DPSAGLSKLL QSTACGSQSV DFNAGFGVVD QGLNMVSGAI 60 DPSGNYPAGF PFIAENIDAH NGKPGSVAGQ VSESVVFSAN NPLMVSSSVS PGVFTSQQQH 120 EFGVVDEKPQ VINPQFMLNQ NQVQFSENPS FFVPLMYPQV QEQQVFPQHQ AKRPLFDTIG 180 HNYQAPSHQL QQAIFDQLYQ TAELIEAGNP VRAQGILARL NHQLSPIGKP FQRAAFYMKE 240 ALMSLLHSNA HSFMAFSPIS FIFKIGAYKS FSEISPVLQF ANFTCNQALI EAVERFDRIH 300 VIDFDIGFGV QWSSFMQEIA LRSSAAPSLK VTAIVSPSTC DEVELNFTKE NLMQYAKDIN 360 VSFEFSVLNI ESLHSPSSPL LGQFFDNEAI AVNMPVSSFI NNPSLFPSAL HFVKQLRPKV 420 VVTLDRICDR IDVSLPTNAV HVLQCYSALL DSLDAVNVNL DVLQKIERHF IQPAIKKIIL 480 GHHHSQEKLP PWRNLFLQSG FSPFTFSNFT EAQAECLVQR APVRGFHVER KPSSLVLCWQ 540 RKELISVSTW RC* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 2e-29 | 200 | 550 | 25 | 378 | Protein SCARECROW |
| 5b3h_A | 1e-29 | 200 | 550 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 1e-29 | 200 | 550 | 24 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Vradi0513s00010.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_014522977.1 | 0.0 | scarecrow-like protein 6 | ||||
| TrEMBL | A0A1S3VXQ0 | 0.0 | A0A1S3VXQ0_VIGRR; scarecrow-like protein 6 | ||||
| STRING | XP_007134753.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3183 | 31 | 70 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00150.1 | 1e-136 | GRAS family protein | ||||




