PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g00550.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 935aa MW: 106100 Da PI: 7.1299

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g00550.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	149.6	7.8e-47	92	213	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 + k+rwl+++ei+aiL n++ +++++++ + p+sg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++n+tf r Vradi05g00550.1 92 EAKSRWLRPNEIHAILCNYKYFKIKAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSTFVR 185 459***************************************************************************************** PP CG-1 97 rcywlLee.......elekivlvhylev 117 rcywlL++ +le+ivlvhy+e+ Vradi05g00550.1 186 RCYWLLDKyvlldfrNLEHIVLVHYRET 213 **974444333579*****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.421	86	219	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-67	90	214	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.1E-42	92	212	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.5E-6	359	473	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.25E-16	384	471	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.71E-17	561	682	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.4E-7	562	649	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.21E-14	569	679	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.2E-15	574	683	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.539	587	652	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.007	620	652	IPR002110	Ankyrin repeat
SMART	SM00248	3.3E-5	620	649	IPR002110	Ankyrin repeat
SMART	SM00248	2300	659	690	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.96E-5	750	831	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	83	783	805	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.474	784	813	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.0E-4	806	828	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.127	807	831	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.9E-4	808	828	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.96E-5	883	910	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	11	883	905	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	885	913	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence Send to blast
KYEKGTEESS VIIIQLPAAF FFLPILTYPS SNQVVGDAIV GFVVREGGVG GENLHLVCLF 60 LMAHDLTGQL VGSEIHGFHT LQDLDVSNTM EEAKSRWLRP NEIHAILCNY KYFKIKAKPV 120 HLPESGTIVL FDRKMLRNFR KDGHNWKKKS DGKTVKEAHE HLKVGNEERI HVYYAHGQDN 180 STFVRRCYWL LDKYVLLDFR NLEHIVLVHY RETREIQLQS SPVTPVNSNS SSVSDPAASW 240 ILAEDLDSGA KSAHSAELND NLTIKSYEEK LHEINTLEWD DLVVSNVNTS TTSNGGNVPH 300 SYQQNQSLLS GSFDNVSVTP LAEVPPLGLQ SQDSFGTWMN NIITDTPCSV DESALETSIS 360 IVREPYSSLV ADNQLSSLPE QVFNLTEVSP AWASSTEKTK VLITGYFHSN YQHLAKFNLV 420 CVCGDVSFPV EIVQVGVYRC WVPPHSPGLV NIYLSFDGHK PISHVVNFEY RTPILHDPTA 480 TMEEKYNWNE FRLQMRLAHL LFSTDKILDI FSNTVSPNAL KEASRFSFRT SFISKSWQFL 540 MKSIDEQTTP FPQVKDSLFE IALKNKLKEW LLERIVVGSK STEYDAQGQG VLHLCAMLGY 600 SWAISLFSWS GLSLDFRDKF GWTALHWAAY YGMEKMVATL LSAGARPNLV TDPTPKNPGG 660 FTAADLAYMK GYDGLAAYLS EKSLVEQFND MSLAGNISGT LDTSSTDVVN AQELTEDQLY 720 LKETLAAYRT AAGAAARIQA AYKEHELNLR YKAVELNTPE HQARRIVAAM KIQHAFRKYE 780 TRKSNAAAVR IQLRFRTRKI RREFLNMRRQ AIKIQAAFRG FQVRRQYKKI IWSVGVLEKA 840 ILRWRLKRKG FRGLQVNSVE DGEQEDGVEE EFFRTGLKQA EERVERSVVR VQAMFRSKKA 900 QEEYRRMKLA YSQAKLDLEF EDFLSSEVDM LTDI*

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence Send to blast

KYEKGTEESS VIIIQLPAAF FFLPILTYPS SNQVVGDAIV GFVVREGGVG GENLHLVCLF  60
LMAHDLTGQL VGSEIHGFHT LQDLDVSNTM EEAKSRWLRP NEIHAILCNY KYFKIKAKPV  120
HLPESGTIVL FDRKMLRNFR KDGHNWKKKS DGKTVKEAHE HLKVGNEERI HVYYAHGQDN  180
STFVRRCYWL LDKYVLLDFR NLEHIVLVHY RETREIQLQS SPVTPVNSNS SSVSDPAASW  240
ILAEDLDSGA KSAHSAELND NLTIKSYEEK LHEINTLEWD DLVVSNVNTS TTSNGGNVPH  300
SYQQNQSLLS GSFDNVSVTP LAEVPPLGLQ SQDSFGTWMN NIITDTPCSV DESALETSIS  360
IVREPYSSLV ADNQLSSLPE QVFNLTEVSP AWASSTEKTK VLITGYFHSN YQHLAKFNLV  420
CVCGDVSFPV EIVQVGVYRC WVPPHSPGLV NIYLSFDGHK PISHVVNFEY RTPILHDPTA  480
TMEEKYNWNE FRLQMRLAHL LFSTDKILDI FSNTVSPNAL KEASRFSFRT SFISKSWQFL  540
MKSIDEQTTP FPQVKDSLFE IALKNKLKEW LLERIVVGSK STEYDAQGQG VLHLCAMLGY  600
SWAISLFSWS GLSLDFRDKF GWTALHWAAY YGMEKMVATL LSAGARPNLV TDPTPKNPGG  660
FTAADLAYMK GYDGLAAYLS EKSLVEQFND MSLAGNISGT LDTSSTDVVN AQELTEDQLY  720
LKETLAAYRT AAGAAARIQA AYKEHELNLR YKAVELNTPE HQARRIVAAM KIQHAFRKYE  780
TRKSNAAAVR IQLRFRTRKI RREFLNMRRQ AIKIQAAFRG FQVRRQYKKI IWSVGVLEKA  840
ILRWRLKRKG FRGLQVNSVE DGEQEDGVEE EFFRTGLKQA EERVERSVVR VQAMFRSKKA  900
QEEYRRMKLA YSQAKLDLEF EDFLSSEVDM LTDI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g00550.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014499049.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1S3TZ74	0.0	A0A1S3TZ74_VIGRR; calmodulin-binding transcription activator 5
STRING	XP_007138978.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]