PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g03060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 430aa    MW: 45550.5 Da    PI: 5.9602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g03060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09208254455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h +  + RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Vradi05g03060.1 208 QHFQHPQLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 254
                      57777789******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.253204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13205263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-13206264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7208254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-8214259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-9216258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MQPCSREMQG INSLFNSSSQ ISLQDLHTTT AATAAAATNQ IQNSHINHHH QQPLQLPHFD  60
PTSQDDFLDQ MFSSCSWPDL NPNKSLWDPN TLSDQTTPSD NDNTNNTNNN NVAFPYDEPS  120
TLASKFRNHQ ISASSTKNAA AALMLQHQLL MSRDSPLLHM PLSLPQNDVV DASSFKSPNP  180
GGETSVQALY NGFAGSLHGA GQASNQTQHF QHPQLRRERI AERMKALQEL VPNANKTDKA  240
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGGDCIQAN GNGNRGGSLA  300
PNSSSNNNQT TASTSNDSLT MTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA  360
TCHTRNPLIN AASGSTHIPT NAAPNALVNP ALASNGEGPS SPSMSVLTVQ SAVVGNEGAV  420
KEAASVSKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g03060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502095.10.0transcription factor bHLH66
TrEMBLA0A1S3U7U00.0A0A1S3U7U0_VIGRR; transcription factor bHLH66
STRINGXP_007138416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-64LJRHL1-like 1