PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g06820.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 164aa    MW: 18594.8 Da    PI: 4.0797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g06820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2285.7e-0950822055
              AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     r p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Vradi05g06820.1 50 RAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 82
                     444...2469***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.17590IPR001471AP2/ERF domain
SMARTSM003805.9E-134596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-174991IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-114992IPR016177DNA-binding domain
PfamPF008471.1E-45482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSYIDYRGFA SCYLETQASV WLYQSTINSG FLLPTFTSDL ILFPTFRTIR APNQKTRIWL  60
GSYSTPEAAA RAYDAALLCL KGSSANFNFP LSSSQYIPGD AVIYDQANES MAMNEMEPWY  120
TLDDLRSPKY VDQMLSGAFF DVDSSHLLDD LYEESDIRLW NFC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g06820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150356e-86AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499978.19e-37ethylene-responsive transcription factor ERF014
TrEMBLI3S9086e-38I3S908_LOTJA; Uncharacterized protein
STRINGXP_004500566.12e-34(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.11e-15ERF family protein