PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g10590.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 225aa MW: 25865.1 Da PI: 8.5767

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g10590.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	185.7	4.9e-58	13	129	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++e ++rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+L+n++++r+frkDG++w+kk+dg+tv E+he+LKvg+ve+l+cyYah+e++p+f Vradi05g10590.1 13 HQEaQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQTPSF 106 677799************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylev 117 qrr+yw+L+ e+e+ivlvhy+++ Vradi05g10590.1 107 QRRSYWMLDPEYEHIVLVHYRNT 129 *******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.142	9	135	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.0E-78	12	130	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.1E-50	15	128	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.1180	8.4E-5	158	191	IPR013780	Glycosyl hydrolase, all-beta

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MTPGYEYDIN DLHQEAQARW LKPAEVMYIL QNHEKFQLTQ EPPQQPTSGS LFLFNKRVLR 60 FFRKDGHNWR KKRDGRTVGE AHERLKVGNV EALNCYYAHG EQTPSFQRRS YWMLDPEYEH 120 IVLVHYRNTS YTKAGKVVAK SLACLTDGAT KTEFNFSNGK NLVVVVYLEW HREDIIRIPV 180 VNENVGVQDS NVPPIGFSTY YVSYAKGEAT ILDGDPAYTS KNGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g10590.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-63	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014501048.1	2e-89	calmodulin-binding transcription activator 4 isoform X2
Refseq	XP_022636593.1	2e-89	calmodulin-binding transcription activator 4 isoform X1
Swissprot	Q9FYG2	4e-65	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0L9TLU4	8e-95	A0A0L9TLU4_PHAAN; Uncharacterized protein (Fragment)
TrEMBL	A0A1S3U4T0	5e-88	A0A1S3U4T0_VIGRR; calmodulin-binding transcription activator 4 isoform X2
TrEMBL	A0A3Q0EXX0	5e-88	A0A3Q0EXX0_VIGRR; calmodulin-binding transcription activator 4 isoform X1
STRING	XP_007158673.1	4e-86	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14241	18	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	2e-67	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]